k_by_k_output_clusters = ../Result/output_TwoSpeciesClustering_20070530121606.txt
outputFile_hm = ../Result/output_TwoSpeciesClustering_20070530121606_hm.txt
outputFile_ms = ../Result/output_TwoSpeciesClustering_20070530121606_ms.txt
gene_pair_result = ../Result/output_TwoSpeciesClustering_20070530121606_genepair.txt
kmeans_result_hm = ../Result/kmeans_human_aging_hf_h_core.txt
kmeans_result_ms = ../Result/kmeans_fly_aging_hf_h_core.txt
outputFile_diag_hm = ../Result/diag_human_clusters_aging_hf_h_core.txt
outputFile_diag_ms = ../Result/diag_fly_clusters_aging_hf_h_core.txt
regulatorGenesFile = ../Data/emptylist.txt
Result_File_Dep = ../Result/somthing_aging_hf_h_core.txt
Kmeans_Converge_Result = ../Result/kmeans_result_aging_hf_h_core.txt
dataFile_hm= ../Data/input_TwoSpeciesClustering_20070530121602_human_core_array.txt
dataFile_ms= ../Data/input_TwoSpeciesClustering_20070530121602_fly_high.txt
annotFile_hm= ../Data/input_TwoSpeciesClustering_20070530121602_human_core_anno.txt
annotFile_ms= ../Data/input_TwoSpeciesClustering_20070530121602_fly_anno.txt
orthologFile= ../Data/input_TwoSpeciesClustering_20070530121602_pairs_human_fly_final.txt
prep = 1
CVThr = 0.1
maxExpr = 100
k = 3
nMaxAlgRun = 1
stoppingThr = 0.0001
psudo_uniform_counts = 0